IDENTIFYING DATA 2010_11
Subject (*) NANOSCALE BIOCHEMISTRY Code 20635259
Study programme
Nanoscience and Nanotechnology (2010)
Cycle 2nd
Descriptors Credits Type Year Period
5 Optional Only annual
Language
Català
Department Enginyeria Química
Coordinator
CONSTANTÍ GARRIGA, MAGDALENA
E-mail magdalena.constanti@urv.cat
Lecturers
CONSTANTÍ GARRIGA, MAGDALENA
Web
General description and relevant information The subject has as general objectives the introduction to the student of the basics of biochemistry and molecular biology and report the immediate principles and structures of biological molecules with emphasis on those compounds displaying nanotechnological interest.

Competences
Type A Code Competences Specific
  Research
  AR18 Understanding gene expression, function of DNA and its derived processes.
  AR19 Understanding the role of proteins, enzymes and antibodies in the body and how the properties of the antibodies can be exploited for diagnostic and therapeutic use.
  AR21 Understanding genomics, transcriptomics and proteomics and the tools that are used to study each one.
Type B Code Competences Transversal
  Research
  BR2 Treballar de manera autònoma amb iniciativa.
  BR4 Capacitat d’organització i planificació.
  BR8 Capacitat d'apendre
  BR10 Habilitats crítiques: anàlisi i sintesi.
Type C Code Competences Nuclear
  Common
  CC3 Communicating effectively as a professional and as a citizen
  CC4 Speaking and understanding a foreign language with complete ease and fluency

Learning aims
Objectives Competences
Understanding the role of proteins, enzymes and antibodies in the body and how the properties of the antibodies can be exploited for diagnostic and therapeutic use. AR18
AR19
AR21
BR2
BR4
Understanding stem cells, differences between embryonic and adult stem cells, and their respective advantages and disadvantages. The methods used for their differentiation and clinical applications. BR8
BR10
CC3
CC4

Contents
Topic Sub-topic
1- General view of Biochemistry. Cellular, chemical and genetic fundamentals of live. Water. Glycids. Lipids. Nucleic acids.
2- Aminoacides, peptides and proteins. Amino acides. Peptide bond and primary structure. Three-dimensional structure of proteins. Folding and denaturalization.
3- Methods to study proteins. Purification and characterization. Determination of amino acidic sequence. Mass spectrometry. Determination of three-dimensional structure; X ray diffraction and nuclear magnetic resonance.
4- Enzymes. Enzymatic catalysis. Michaelis-Menten model. Allosteric enzymes. Enzymatic inhibition. Regulation of enzymatic activity. Catalytic strategies. General view of metabolism.
5- Biomembranes. Lipids as a biomembrane components. Proteins as a biomembrane components. Transport and energy transduction. Examples of biomembranes components: membrane transporters, potassium-sodium pump, ATPases, TMS transporters.
6- Nucleic acids. Composition and structure of DNA and RNA. Physic and chemical properties. Interactions between proteins and nucleic acids. Special nucleotides: TFOs, TFBs. Hairpins, aODNs, iRNAs, biological applications.
7- Methods to study nucleic acids. Electrophoresis. Nucleic acid hybridisation. Enzyme to handle nucleic acids. Polymerase chain reaction (PCR): fundamentals and applications. DNA sequencing. DNA cloning.
8- Micro arrays. Types. Construction: lithographic techniques. Applications: gene expression determination, genotyping, SNPs identification, specific binding to transcription factors, identification of protein interactions.

Planning
Methodologies  ::  Tests
  Competences (*) Class hours Hours outside the classroom (**) Total hours
Introductory activities
1 1 2
 
Lecture
20 40 60
Assignments
5 10 15
Presentations / expositions
7 14 21
 
Personal tuition
8 0 8
 
Objective short-answer tests
7 0 7
Extended-answer tests
6 6 12
 
(*) On e-learning, hours of virtual attendance of the teacher.
(**) The information in the planning table is for guidance only and does not take into account the heterogeneity of the students.

Methodologies
Methodologies
  Description
Introductory activities A presentation of the subject which also includes the basic concepts that students should already have acquired in the past.
Lecture Lecture sessions showing the contents of the course. The lectures will be supported by audiovisual media: presentations power-point with videos and animations.
Assignments
Working in depth a topic by the student.
These works have a direct relationship with the content taught in the master session. Solving exercises.
Presentations / expositions
Presentation and and public defence in class of a topic previously written by students either individually or in groups.

Personalized attention
 
Personal tuition
Description
Meetings with students either individually or in small groups to answer questions, indicate areas of improvement and guide the overall development of the subject.

Assessment
  Description Weight
Assignments
There will be an oral presentation of a particular topic
20%
Presentations / expositions
Presentation and and public defence in class of a topic previously written by students either individually or in groups.
15%
Objective short-answer tests Two objective tests throughout the course. (first test: 25%) and (second test: 40%) 65%
 
Other comments and second exam session

Sources of information

Basic NELSON, COX, Lehninger Principles of Biochemistry. 3a edició., Worth Publishers, darrera edició
DEVLIN, T. M., Bioquímica, Ed. Reverté, darrera edició
LODISH, Harvey et al., Biología celular y molecular. 4a ed., Editorial Médica Panamericana, darrera edició
LUQUE, J.; HERRAEZ, A., Biologia Molecular e Ingeniería Genética., Harcourt, darrera edició
McKEE, T., Bioquímica. La base molecular de la vida. 3a edició., McGraw Hill/Interamericana, darrera edició
STRYER, L., Bioquímica., Reverté, darrera edició

Complementary

Recommendations


(*)The teaching guide is the document in which the URV publishes the information about all its courses. It is a public document and cannot be modified. Only in exceptional cases can it be revised by the competent agent or duly revised so that it is in line with current legislation.