IDENTIFYING DATA 2020_21
Subject (*) MOLECULAR GENETICS AND GENETIC ENGINEERING Code 13214112
Study programme
Bachelor's Degree in Biochemistry and Molecular Biology (2009)
Cycle 1st
Descriptors Credits Type Year Period
6 Compulsory Third 1Q
Language
Català
Department Biochemistry and Biotechnology
Coordinator
FERNÁNDEZ LARREA, JUAN BAUTISTA
E-mail juanbautista.fernandez@urv.cat
neus.martinez@urv.cat
carolina.serena@urv.cat
Lecturers
FERNÁNDEZ LARREA, JUAN BAUTISTA
MARTÍNEZ MICAELO, NIEVES BEATRIZ
SERENA PERELLÓ, CAROLINA
Web
General description and relevant information <p> Organization of genetic information in DNA sequences. Basic knowledge of recombinant DNA technology and its applications for the manipulation of genomes and gene expression in prokaryotic and eukaryotic organisms.&nbsp;</p><div><div><b>Theory and problem teaching will be mixed (face-to-face and distance) with scheduled hours. The practical laboratory classes will preferably be held in person with scheduled hours taking into account the capacity of the laboratories and the limitations encountered by the Covid-19. The specific organization will be specified in the Moodle space of the subject depending on the health emergency situation.</b></div></div>

Competences
Type A Code Competences Specific
 CE10 Appreciate the complexity and diversity of organisms through the study of their molecules, cells, physiological processes, genetics and evolution.
 CE11 Appreciate the speed of potential changes in Biochemistry.
Type B Code Competences Transversal
Type C Code Competences Nuclear

Learning outcomes
Type A Code Learning outcomes
 CE10 Understand how oncogenes are able to initiate tumor growth.
Understand the biological significance of DNA repair and recombination processes and their importance in the evolution of genomes.
Know how information is organized in the eukaryotic nuclear genome and become aware of the limitations of our knowledge and the speed of change.
Know the basic tools of recombinant DNA technology, molecular cloning and the construction of genotheques.
Be aware that discoveries in molecular genetics have made possible the development of recombinant DNA technology.
Be able to discuss the potential effects of mutations depending on the specific site of the DNA sequence in which they occur.
Be able to discuss the importance of epigenetic mechanisms that can modulate the message expression of the DNA sequence. Know that DNA methylation can be influenced by environmental factors such as diet.
 CE11 Know how information is organized in the eukaryotic nuclear genome and become aware of the limitations of our knowledge and the speed of change.
Know the basic tools of recombinant DNA technology, molecular cloning and the construction of genotheques.
Be aware that discoveries in molecular genetics have made possible the development of recombinant DNA technology.
Be able to discuss the importance of epigenetic mechanisms that can modulate the message expression of the DNA sequence. Know that DNA methylation can be influenced by environmental factors such as diet.
Type B Code Learning outcomes
Type C Code Learning outcomes

Contents
Topic Sub-topic
1. Introduction. Organization of the subject. Basic concepts of Molecular Genetics and Genetic Engineering.
2. Manipulation and characterization of DNA and RNA in vitro. Chemical synthesis of DNA and RNA. DNA and RNA polymerases. PCR. DNA and RNA sequencing. Restriction enzymes. Ligases. DNA marking. Southern, Northern. DNA microarrays.
3. Molecular Cloning in Escherichia coli. Vectors for the amplification and expression of genes in E. coli: plasmids and bacteriophages. Use of DNA in E. coli recombinant selection. Modification and expression of cloned genes. Genomic library and expression libraries. Expression of recombinant proteins in E. coli.
4. Genetic engineering in Saccharomyces cerevisiae yeast.
5. Classical genetic engineering in plants.
6. Classical genetic engineering in animal cells and organisms.
7. Editing eukaryotic genomes using CRISPR / Cas9 technology.
8. Manipulating gene expression in eukaryotes using small silencing RNAs.
10. Organizing the genome in model eukaryotic organisms.
12. Genetic variations and genetic diseases.

Planning
Methodologies  ::  Tests
  Competences (*) Class hours
Hours outside the classroom
(**) Total hours
Introductory activities
CE10
CE11
4 0 4
Lecture
CE10
CE11
24 36 60
Laboratory practicals
CE10
CE11
15 22.5 37.5
Problem solving, exercises
CE10
CE11
15 22.5 37.5
Personal attention
0 4 4
 
Mixed tests
CE10
CE11
2 4 6
 
(*) On e-learning, hours of virtual attendance of the teacher.
(**) The information in the planning table is for guidance only and does not take into account the heterogeneity of the students.

Methodologies
Methodologies
  Description
Introductory activities Activities aimed at contacting and collecting information from students and presentation of the subject.
Lecture Sessions where the teacher explains the main content of the subject
Laboratory practicals Apply, at a practical level, the theory in a given context. Practical exercises through the different laboratories.
Problem solving, exercises Work in class and at home on problems related to the subject. Moodle questionnaires.
Personal attention Time that each teacher has reserved to attend and resolve doubts to students.

Personalized attention
Description

Time each teacher has reserved to attend and answer questions to students. Due to the health emergency, student care may be carried out through online meetings, at previously arranged times by email, or through other virtual tools.


Assessment
Methodologies Competences Description Weight        
Laboratory practicals
CE10
CE11
Prior preparation, active participation, attendance and motivation, preparation of a report of results and achievement of knowledge will be evaluated through short questions or problem solving. 25%
Problem solving, exercises
CE10
CE11
Problem solving in the classroom, participation in problem sessions, solving questionnaires in Moodle 25%
Mixed tests
CE10
CE11
It will consist of an exam of the mixed tests type, which will include all the content worked on in the subject 50%
Others  
 
Other comments and second exam session

Internships are compulsory. In order to weigh all the sections, a minimum grade of 50% of each part will be required. The second call will consist of a mixed test where all the contents of the subject will be evaluated. A minimum grade of 50% is required. The grade obtained during the course of problems and practices will be saved.

During the assessment tests, mobile phones, tablets and other devices not expressly authorized for the test must be switched off and out of sight. The demonstratively fraudulent realization of some evaluative activity of some asignatura so much in material support as virtual and electronic carries to the student the note of suspense of this evaluative activity. Regardless of this, given the gravity of the facts, the center may propose the initiation of a disciplinary proceeding, which will be initiated by resolution of the rector.


Sources of information

Basic Primose S.B. and Twyman R.M, PRINCIPLES OF GENE MANIPULATION AND GENOMICS, Útima edición disponible en CRAI Sescelades,
Terry Brown, Gene cloning and DNA analysis, Útima edición disponible.,
Greg Gibson; Spencer V. Muse , A Primer of Genome Science , Útima edición disponible.,
Krebs, JE, Goldstein ES, Kilpatrick ST, Lewin's Essential GENES, Útima edición disponible.,

Complementary Peter Sudbery , Genética Molecular humana , Útima edición disponible en CRAI Sescelades. ,
Philip Meneely , Advanced Genetic Analysis , Útima edición disponible.,
Lewin B, GENES X, Útima edición disponible.,
Watson J.D. et al, BIOLOGÍA MOLECULAR DEL GEN, Útima edición disponible.,

Recommendations

Subjects that continue the syllabus
METHODOLOGY AND EXPERIMENTATION IN MOLECULAR BIOSCIENCES I/13214121
EPIGENETICS/13214216

Subjects that are recommended to be taken simultaneously
METHODOLOGY AND EXPERIMENTATION IN MOLECULAR BIOSCIENCES I/13214121

Subjects that it is recommended to have taken before
GENETICS/13214007
GENE EXPRESSION AND REPLICATION/13214102
(*)The teaching guide is the document in which the URV publishes the information about all its courses. It is a public document and cannot be modified. Only in exceptional cases can it be revised by the competent agent or duly revised so that it is in line with current legislation.